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2002–2009

From the Scottish Women's Football Association national and regional leagues dating from 1972, the SWFA and clubs formed the Scottish Women's Football League (SWFL) in 1999, with four national divisions. Its top division broke away to form the Scottish Women's Premier League (SWPL) in 2002, with the aim of introducing a more professional attitude and increasing media interest. The twelve founder members of the SWPL were Ayr United, Cove Rangers, Dundee, Giulianos, Glasgow City, F.C. Hamilton, Hibernian, Inver-Ross, F.C. Kilmarnock, Lossiemouth, Raith Rovers and Shettleston.

In the 2002–03 season, Kilmarnock became the champions, after a title race with Hibernian. Kilmarnock Ladies had formed from the 1971 Scottish Women's Cup-winners Stewarton Thistle, and Killie also won the 2001–02 SWFL, two Scottish Cups, and four consecutive League Cups. Kilmarnock's success faded after the departure of manager Jim Chapman and of Scotland internationals including Shelley Kerr, Joanne Love and Linda Brown.

Hibernian Ladies were the most successful club in the League's first five years. The title in 2003–04 went to Hibs, 14 points ahead of Glasgow City, and Hibernian added further titles in 2005–06 and in 2006–07 (winning every game that season). The Hibs squad included Scotland's Pauline Hamill, Kirsty McBride, Suzanne Grant, Joelle Murray and Kim Little.

Glasgow City won the Scottish championship for the first time in 2004–05, coached by Peter Caulfield. The club's next title was in season 2007–08, beating Hibernian by five points, with Celtic placing third in its first season. In 2007, the running of the League was taken over by the Scottish Football Association while the SWFA, renamed SWF, thereafter operated as part of the SFA.

2009–2019

The women's leagues' move from a winter to a summer schedule (March–November), from 2009, saw a rise in attendances in its first seasons, and far fewer match postponements.

In the 11-year era of the summer schedule in Scottish women's football, Glasgow City won every title and became one of the most dominant clubs in any national league in world football. Between the 2007–08 and 2015 seasons, City lost only four matches in the League, with squads including Jane Ross, Denise O'Sullivan (each a winner of the SWPL Players' Player of the Year), and Leanne Ross, who ultimately scored 250 goals in 12 seasons at the club. Glasgow City also won the domestic Treble in 2012, 2013, 2014 and 2015.

Glasgow City considered applying to join the English league in 2013. Club co-founder Carol Anne Stewart commented, "the FA are investing seriously in women's football. This is where the SFA are miles behind. They don't recognise the potential".

The issue of competitive imbalance was the catalyst for the separation of the top Scottish clubs into two reduced divisions, SWPL 1 and SWPL 2, in 2016.

The first professional contracts in the SWPL were signed at Glasgow Girls (Glasgow Women) in 2016, by Lauren Coleman and Lauren Evans. The next full-time contracts were offered later by Rangers and Celtic.

2020–present

There were fears for the league's survival when the 2020 season was halted and eventually voided due to the COVID-19 pandemic. Along with other Scottish football organisations, the SWPL and SWF Championship received donations from the philanthropist James Anderson and from an anonymous donor: "The focus was to buy time so the women’s game could survive the COVID crisis until it was safe for football to return." The £437,500 total was the biggest investment in SWF to date.

The 2020–21 season was completed, as Glasgow City won their 14th title in a row. In 2022, a majority of the 17 SWPL clubs voted to leave SWF and join the SPFL after months of negotiations between those parties and the SFA, and an SFA review from April 2020 until mid-2021, which resolved to improve governance of elite competitions. The decision was aimed at improving the league's commercial profile and broadcasting deal. The league maintained its two divisions and expanded to 20 clubs. The top two tiers of women's football are run within the SPFL by a separate board that includes the clubs' representatives.